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Resource Profile: AthenaAllergy - Mappings

Active as of 2022-03-01

Mappings for the athena-allergy-profile resource profile.

Mappings for athenaFlow (http://unknown.org/athenaFlow)

AthenaAllergy
AllergyIntolerance	FHIRR4_ALLERGYINTOLERANCEVIEW
id	MakeId("ALLERGY",%RESOURCEID%)
meta
versionId	MakeId(%AID%)
lastUpdated	%WHENUPDATED%
security
security (SENSITIVECHART)	CheckSensitive(%SENSITIVECHART%)
security (CONFABBR)
system	getSiteCodeSystem("ConfidentialDocument")
code	%CONFABBR%
tag	MakeChangeTagList(%CHANGE%)
extension
extension (encounter)
value[x]	MakeReference("ALLERGY",%SDID%,"Encounter")
extension (enddate)
value[x]	%STOPDATE%
identifier	MakeIdentifier("U",getSiteSystem("AllergyId"),%EXTALLERGYID%)
clinicalStatus	MapConceptCode("active",%CLINICALSTATUS%,"ALLERGYCLINICALSTATUS")
verificationStatus	MapConcept(%VERIFICATIONSTATUS%,"ALLERGYVERIFICATIONSTATUS")
category	MapCode(%ALLCLASS%,"ALLERGYCLASS")
criticality	MapCode(%ISCRITICAL%,"ALLERGYCRIT")
code
coding
coding (LabProd)
code	%NDCLABPROD%
coding (GPI)
code	%GPI%
coding (DDID)
code	%DDID%
coding (KDC)
code	%KDC%
coding (SNOMED)
code	%SNOMED%
coding (RXNORM)	MakeRxnormCodingList(%RXNORM%,"http://www.nlm.nih.gov/research/umls/rxnorm",null)
text	%NAME%
patient	MakeReference("PERSON",%PID%,"Patient")
onset[x]	%ONSETDATE% | %APPROXONSET%
recordedDate	%WHENCREATED%
recorder	MakeReference("USR",%CREATOR%,%USRID%,"Practitioner")
note	makeAnnotation(%DESCRIPTION%)
reaction
manifestation
reaction (SHOCK)
manifestation
coding	MakeCoding(%SHOCK%,"http://snomed.info/sct", "Shock")
reaction (RESP)
manifestation
coding	MakeCoding(%RESP%,"http://snomed.info/sct", "Shortness of Breath")
reaction (GI)
manifestation
coding	MakeCoding(%GI%,"http://snomed.info/sct", "Gastrointestinal")
reaction (HEME)
manifestation
coding	MakeCoding(%HEME%,"http://snomed.info/sct", "Bleeding")
reaction (RASH)
manifestation
coding	MakeCoding(%RASH%,"http://snomed.info/sct", "Rash")
reaction (OTHER)
manifestation
coding	MakeCoding(%OTHER%,"http://snomed.info/sct", %DESCRIPTION%)

Mappings for athenaPractice (http://unknown.org/athenaPractice)

AthenaAllergy
AllergyIntolerance	FHIRR4_ALLERGYINTOLERANCEVIEW
id	MakeId("ALLERGY",%RESOURCEID%)
meta
versionId	MakeId(%AID%)
lastUpdated	%WHENUPDATED%
security
security (SENSITIVECHART)	CheckSensitive(%SENSITIVECHART%)
security (CONFABBR)
system	getSiteCodeSystem("ConfidentialDocument")
code	%CONFABBR%
tag	MakeChangeTagList(%CHANGE%)
extension
extension (encounter)
value[x]	MakeReference("ALLERGY",%SDID%,"Encounter")
extension (enddate)
value[x]	%STOPDATE%
identifier	MakeIdentifier("U",getSiteSystem("AllergyId"),%EXTALLERGYID%)
clinicalStatus	MapConceptCode("active",%CLINICALSTATUS%,"ALLERGYCLINICALSTATUS")
verificationStatus	MapConcept(%VERIFICATIONSTATUS%,"ALLERGYVERIFICATIONSTATUS")
category	MapCode(%ALLCLASS%,"ALLERGYCLASS")
criticality	MapCode(%ISCRITICAL%,"ALLERGYCRIT")
code
coding
coding (LabProd)
code	%NDCLABPROD%
coding (GPI)
code	%GPI%
coding (DDID)
code	%DDID%
coding (KDC)
code	%KDC%
coding (SNOMED)
code	%SNOMED%
coding (RXNORM)	MakeRxnormCodingList(%RXNORM%,"http://www.nlm.nih.gov/research/umls/rxnorm",null)
text	%NAME%
patient	MakeReference("PERSON",%PID%,"Patient")
onset[x]	%ONSETDATE% | %APPROXONSET%
recordedDate	%WHENCREATED%
recorder	MakeReference("USR",%CREATOR%,%USRID%,"Practitioner")
note	makeAnnotation(%DESCRIPTION%)
reaction
manifestation
reaction (SHOCK)
manifestation
coding	MakeCoding(%SHOCK%,"http://snomed.info/sct", "Shock")
reaction (RESP)
manifestation
coding	MakeCoding(%RESP%,"http://snomed.info/sct", "Shortness of Breath")
reaction (GI)
manifestation
coding	MakeCoding(%GI%,"http://snomed.info/sct", "Gastrointestinal")
reaction (HEME)
manifestation
coding	MakeCoding(%HEME%,"http://snomed.info/sct", "Bleeding")
reaction (RASH)
manifestation
coding	MakeCoding(%RASH%,"http://snomed.info/sct", "Rash")
reaction (OTHER)
manifestation
coding	MakeCoding(%OTHER%,"http://snomed.info/sct", %DESCRIPTION%)

Mappings for RIM Mapping (http://hl7.org/v3)

AthenaAllergy
AllergyIntolerance	Entity. Role, or Act, Observation[classCode=OBS, moodCode=EVN]
meta
id	n/a
extension	n/a
security
security (SENSITIVECHART)
security (CONFABBR)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
text	Act.text?
contained	N/A
extension
extension (encounter)
id	n/a
extension	n/a
url	N/A
value[x]	N/A
extension (enddate)
id	n/a
extension	n/a
url	N/A
value[x]	N/A
modifierExtension	N/A
identifier	id
clinicalStatus	Observation ACT .inboundRelationship[typeCode=COMP].source[classCode=OBS, code="clinicalStatus", moodCode=EVN].value
verificationStatus	Observation ACT .inboundRelationship[typeCode=COMP].source[classCode=OBS, code="verificationStatus", moodCode=EVN].value
type	code
category	value < IntoleranceValue (Agent)
criticality	inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code=SEV, value <= SeverityObservation (Severity Level)]
code	substance/product: .participation[typeCode=CAGNT].role[classCode=ADMM].player[classCode=MAT, determinerCode=KIND, code <= ExposureAgentEntityType] negated/excluded substance/product: .participation[typeCode=CAGNT, negationInd=true].role[classCode=ADMM].player[classCode=MAT, determinerCode=KIND, code <= ExposureAgentEntityType] positive or negated/excluded condition/situation: Observation.code=ASSERTION; Observation.value
id	n/a
extension	n/a
coding	union(., ./translation)
coding (LabProd)	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
coding (GPI)	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
coding (DDID)	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
coding (KDC)	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
coding (SNOMED)	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
coding (RXNORM)	union(., ./translation)
text	./originalText[mediaType/code="text/plain"]/data
patient	.participation[typeCode=SBJ].role[classCode=PAT]
encounter	.inboundRelationship[typeCode=COMP].source[classCode=ENC, moodCode=EVN]
onset[x]	effectiveTime.low
recordedDate	.participation[typeCode=AUT].time
recorder	.participation[typeCode=AUT].role
asserter	.participation[typeCode=INF].role
lastOccurrence	outBoundRelationship[typeCode=SUBJ].target[classCode=OBS, moodCode=EVN, code <= CommonClinicalObservationType, value <= ObservationValue (Reaction Type)].effectiveTime
note	subjectOf.observationEvent[code="annotation"].value
reaction	outBoundRelationship[typeCode=SUBJ].target[classCode=OBS, moodCode=EVN, code <= CommonClinicalObservationType, value <= ObservationValue (Reaction Type)]
id	n/a
extension	n/a
modifierExtension	N/A
substance	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].participation[typeCode=CSM].role[classCode=ADMM].player[classCode=MAT, determinerCode=KIND, code <= ExposureAgentEntityType]
manifestation	code
description	text
onset	effectiveTime.low
severity	inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code=SEV, value <= SeverityObservation (Severity Level)]
exposureRoute	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].routeCode
note	subjectOf.observationEvent[code="annotation"].value
reaction (SHOCK)	outBoundRelationship[typeCode=SUBJ].target[classCode=OBS, moodCode=EVN, code <= CommonClinicalObservationType, value <= ObservationValue (Reaction Type)]
id	n/a
extension	n/a
modifierExtension	N/A
substance	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].participation[typeCode=CSM].role[classCode=ADMM].player[classCode=MAT, determinerCode=KIND, code <= ExposureAgentEntityType]
manifestation	code
id	n/a
extension	n/a
coding	union(., ./translation)
text	./originalText[mediaType/code="text/plain"]/data
description	text
onset	effectiveTime.low
severity	inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code=SEV, value <= SeverityObservation (Severity Level)]
exposureRoute	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].routeCode
note	subjectOf.observationEvent[code="annotation"].value
reaction (RESP)	outBoundRelationship[typeCode=SUBJ].target[classCode=OBS, moodCode=EVN, code <= CommonClinicalObservationType, value <= ObservationValue (Reaction Type)]
id	n/a
extension	n/a
modifierExtension	N/A
substance	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].participation[typeCode=CSM].role[classCode=ADMM].player[classCode=MAT, determinerCode=KIND, code <= ExposureAgentEntityType]
manifestation	code
id	n/a
extension	n/a
coding	union(., ./translation)
text	./originalText[mediaType/code="text/plain"]/data
description	text
onset	effectiveTime.low
severity	inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code=SEV, value <= SeverityObservation (Severity Level)]
exposureRoute	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].routeCode
note	subjectOf.observationEvent[code="annotation"].value
reaction (GI)	outBoundRelationship[typeCode=SUBJ].target[classCode=OBS, moodCode=EVN, code <= CommonClinicalObservationType, value <= ObservationValue (Reaction Type)]
id	n/a
extension	n/a
modifierExtension	N/A
substance	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].participation[typeCode=CSM].role[classCode=ADMM].player[classCode=MAT, determinerCode=KIND, code <= ExposureAgentEntityType]
manifestation	code
id	n/a
extension	n/a
coding	union(., ./translation)
text	./originalText[mediaType/code="text/plain"]/data
description	text
onset	effectiveTime.low
severity	inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code=SEV, value <= SeverityObservation (Severity Level)]
exposureRoute	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].routeCode
note	subjectOf.observationEvent[code="annotation"].value
reaction (HEME)	outBoundRelationship[typeCode=SUBJ].target[classCode=OBS, moodCode=EVN, code <= CommonClinicalObservationType, value <= ObservationValue (Reaction Type)]
id	n/a
extension	n/a
modifierExtension	N/A
substance	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].participation[typeCode=CSM].role[classCode=ADMM].player[classCode=MAT, determinerCode=KIND, code <= ExposureAgentEntityType]
manifestation	code
id	n/a
extension	n/a
coding	union(., ./translation)
text	./originalText[mediaType/code="text/plain"]/data
description	text
onset	effectiveTime.low
severity	inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code=SEV, value <= SeverityObservation (Severity Level)]
exposureRoute	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].routeCode
note	subjectOf.observationEvent[code="annotation"].value
reaction (RASH)	outBoundRelationship[typeCode=SUBJ].target[classCode=OBS, moodCode=EVN, code <= CommonClinicalObservationType, value <= ObservationValue (Reaction Type)]
id	n/a
extension	n/a
modifierExtension	N/A
substance	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].participation[typeCode=CSM].role[classCode=ADMM].player[classCode=MAT, determinerCode=KIND, code <= ExposureAgentEntityType]
manifestation	code
id	n/a
extension	n/a
coding	union(., ./translation)
text	./originalText[mediaType/code="text/plain"]/data
description	text
onset	effectiveTime.low
severity	inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code=SEV, value <= SeverityObservation (Severity Level)]
exposureRoute	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].routeCode
note	subjectOf.observationEvent[code="annotation"].value
reaction (OTHER)	outBoundRelationship[typeCode=SUBJ].target[classCode=OBS, moodCode=EVN, code <= CommonClinicalObservationType, value <= ObservationValue (Reaction Type)]
id	n/a
extension	n/a
modifierExtension	N/A
substance	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].participation[typeCode=CSM].role[classCode=ADMM].player[classCode=MAT, determinerCode=KIND, code <= ExposureAgentEntityType]
manifestation	code
id	n/a
extension	n/a
coding	union(., ./translation)
text	./originalText[mediaType/code="text/plain"]/data
description	text
onset	effectiveTime.low
severity	inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code=SEV, value <= SeverityObservation (Severity Level)]
exposureRoute	outBoundRelationship[typeCode=SAS].target[classCode=SBADM, code <= ExposureCode].routeCode
note	subjectOf.observationEvent[code="annotation"].value

Mappings for FiveWs Pattern Mapping (http://hl7.org/fhir/fivews)

AthenaAllergy
AllergyIntolerance
identifier	FiveWs.identifier
clinicalStatus	FiveWs.status
verificationStatus	FiveWs.status
type	FiveWs.class
category	FiveWs.class
criticality	FiveWs.grade
code	FiveWs.what[x]
patient	FiveWs.subject[x], FiveWs.subject
encounter	FiveWs.context
onset[x]	FiveWs.init
recordedDate	FiveWs.recorded
recorder	FiveWs.author
asserter	FiveWs.source

Mappings for HL7 v2 Mapping (http://hl7.org/v2)

AthenaAllergy
AllergyIntolerance
meta
security
security (SENSITIVECHART)
security (CONFABBR)
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
identifier	IAM-7
type	IAM-9
category	AL1-2
criticality	AL1-4
code	AL1-3 / IAM-3
coding	C*E.1-8, C*E.10-22
coding (LabProd)	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
coding (GPI)	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
coding (DDID)	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
coding (KDC)	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
coding (SNOMED)	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
coding (RXNORM)	C*E.1-8, C*E.10-22
text	C*E.9. But note many systems use C*E.2 for this
patient	(PID-3)
recordedDate	IAM-13
asserter	IAM-14 (if patient) / IAM-18 (if practitioner)
reaction
manifestation	AL1-5
onset	AL1-6
reaction (SHOCK)
manifestation	AL1-5
coding	C*E.1-8, C*E.10-22
text	C*E.9. But note many systems use C*E.2 for this
onset	AL1-6
reaction (RESP)
manifestation	AL1-5
coding	C*E.1-8, C*E.10-22
text	C*E.9. But note many systems use C*E.2 for this
onset	AL1-6
reaction (GI)
manifestation	AL1-5
coding	C*E.1-8, C*E.10-22
text	C*E.9. But note many systems use C*E.2 for this
onset	AL1-6
reaction (HEME)
manifestation	AL1-5
coding	C*E.1-8, C*E.10-22
text	C*E.9. But note many systems use C*E.2 for this
onset	AL1-6
reaction (RASH)
manifestation	AL1-5
coding	C*E.1-8, C*E.10-22
text	C*E.9. But note many systems use C*E.2 for this
onset	AL1-6
reaction (OTHER)
manifestation	AL1-5
coding	C*E.1-8, C*E.10-22
text	C*E.9. But note many systems use C*E.2 for this
onset	AL1-6